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Soil Chemistry

Nanoscale Biogeocomplexity of the Organomineral Assemblage in Soil

Application of STXM Microscopy and C 1s-NEXAFS Spectroscopy

^a Dep. of Crop and Soil Sci., Cornell Univ., Ithaca, NY 14853
^b Dep. of Physics and Astronomy, State University of New York, Stony Brook, NY 11794

^* Corresponding author (CL273{at}cornell.edu)

Methodological constraints limit the extent to which existing soil aggregation models explain carbon (C) stabilization in soil. We hypothesize that the physical infrastructure of microaggregates plays a major role in determining the chemistry of the occluded C and intimate associations between particulate C, chemically stabilized C and the soil mineral matrix. We employed synchrotron-based scanning transmission X-ray microscopy (STXM) coupled with near-edge X-ray absorption fine structure (C 1s-NEXAFS) spectroscopy to investigate the nanoscale physical assemblage and C chemistry of 150-µm microaggregates from a Kenyan Oxisol. Ultra-thin sections were obtained after embedding microaggregates in a sulfur block and sectioning on a cryo-microtome at –55°C. Principal component and cluster analyses revealed four spatially distinct features: pore surfaces, mineral matter, organic matter, and their mixtures. The occurrence of these features did not vary between exterior and interior locations; however, the degree of oxidation decreased while the complexity and occurrence of aliphatic C forms increased from exterior to interior regions of the microaggregate. At both locations, compositional mapping rendered a nanoscale distribution of oxidized C clogging pores and coating pore cavities on mineral surface. Hydrophobic organic matter of aromatic and aliphatic nature, representing particulate C forms appeared physically occluded in 2- to 5-µm pore spaces. Our findings demonstrate that organic matter in microaggregates may be found as either oxidized C associated with mineral surfaces or aromatic and aliphatic C in particulate form. Using STXM and C 1s-NEXAFS we are for the first time able to resolve the nanoscale biogeocomplexity of unaltered soil microaggregates.

Abbreviations: BC, black carbon • CM-Io, mineral background • OD, optical density • PS-Io, pore space background • SOM, soil organic matter • SVD, singular value decomposition

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